PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g015090.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 508aa    MW: 57741.7 Da    PI: 8.3331
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g015090.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.23.5e-17166215155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Sopen02g015090.1 166 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 215
                       78*******************......55************************998 PP

2AP244.44.2e-14258308155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV+ +k  grW+A+       g    +k+++lg f+t++eAa+a+++a+ k +g
  Sopen02g015090.1 258 SKYRGVTLHK-CGRWEAR---M---GqllGKKYVYLGLFDTENEAARAYDKAAIKCNG 308
                       89********.7******...5...334336**********************99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.4E-9166215IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-16166224IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.2E-17167223IPR001471AP2/ERF domain
CDDcd000186.04E-11167222No hitNo description
PROSITE profilePS5103217.649167223IPR001471AP2/ERF domain
SMARTSM003801.3E-31167229IPR001471AP2/ERF domain
PfamPF008475.8E-10258308IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-17258316IPR016177DNA-binding domain
CDDcd000181.11E-25258316No hitNo description
Gene3DG3DSA:3.30.730.101.2E-16259316IPR001471AP2/ERF domain
PROSITE profilePS5103216.015259316IPR001471AP2/ERF domain
SMARTSM003802.9E-31259322IPR001471AP2/ERF domain
PRINTSPR003672.1E-5260271IPR001471AP2/ERF domain
PRINTSPR003672.1E-5298318IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MWNLNNSPDH IKDYESEEGK GVGSISNSSS SAVEELYGSD EEDEFLEQSG LKGKKKKNIP  60
SKIFGFSMIA PPSNNNNNDD NLSSESEPPV TRQFFPVDES EIGSGSFHDR SCRFPRAHWA  120
GVKFYQPEPS ANSPALLGKG SELSQQVQVQ VQPMKKSRRG PRSRSSQYRG VTFYRRTGRW  180
ESHIWDCGKQ VYLGGFDTAH AAARAYDRAA IKFRGMEADI NFNLEDYEED LKQMKNLTKE  240
EFVHVLRRQS TGFPRGSSKY RGVTLHKCGR WEARMGQLLG KKYVYLGLFD TENEAARAYD  300
KAAIKCNGKD AVTNFDPCIY ENELNSSECS NKAADHSLDL SLGSSSSKQN SREMEDANKN  360
QNYSSIQFDV DWRHQGSKPM QPSPLDMEYG RRRNMYNETE TLQLFSQTHL HSPGSFKTNS  420
NEMQRFGQYM RAGDSQMIPP QFTSSNYQFQ FPSSSNRRDT QQWQSNNVPP PHLFATAAAS  480
SGFPQQILRH QNWPHKNGFN YSLTRPSN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5869520.0HQ586952.1 Solanum lycopersicum AP2 transcription factor SlAP2b mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015063600.10.0PREDICTED: floral homeotic protein APETALA 2-like isoform X2
SwissprotP479271e-120AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLK4B6T10.0K4B6T1_SOLLC; Uncharacterized protein
STRINGSolyc02g064960.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20192365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-114AP2 family protein